CVE-2026-31969 HIGH

CVE-2026-31969: HTSlib CRAM decoder has a heap buffer overflow

Vendor Samtools
Product htslib
Weakness CWE-122
Published March 18, 2026
Last update March 18, 2026

CVSS base score

7.1/10
Attack vector Network
Attack complexity Low
Privileges required None
User interaction
Confidentiality
Integrity

CVSS vector

CVSS:4.0/AV:N/AC:L/AT:N/PR:N/UI:P/VC:N/VI:H/VA:L/SC:N/SI:N/SA:N

What the vulnerability does

01Description

HTSlib is a library for reading and writing bioinformatics file formats. CRAM is a compressed format which stores DNA sequence alignment data using a variety of encodings and compression methods. When reading data encoded using the `BYTE_ARRAY_STOP` method, an out-by-one error in the `cram_byte_array_stop_decode_char()` function check for a full output buffer could result in a single attacker-controlled byte being written beyond the end of a heap allocation. Exploiting this bug causes a heap buffer overflow. If a user opens a file crafted to exploit this issue, it could lead to the program crashing, or overwriting of data and heap structures in ways not expected by the program. It may be possible to use this to obtain arbitrary code execution. Versions 1.23.1, 1.22.2 and 1.21.1 include fixes for this issue. There is no workaround for this issue.

Key dates

02Disclosure timeline

March 18, 2026 CVE published
March 18, 2026 Record updated